Tutorial for 4DN new members
Welcome to 4DN! Watch this video on YouTube to learn how to use 4DN tools and services!
Tutorial Materials
This is a list of past and up-coming conferences and tutorial material advertising 4DN progress with workshops
and scientific talks. If you have any suggestion please contact us sending an email to oh@4dnucleome.org
4DN Investigator Featured on 'Science Happens!'
In Episode 5 of 'Science Happens,' named: 'Everything you thought you knew about the shape of DNA is wrong'. Watch Dr. Job Dekker describe how the folding of DNA strands holds cues to human health here.
Conversations: A Guide to Packing Your DNA
Genetic material is not randomly organized within the nucleus of a cell. How this organization occurs and why it matters are questions that Cell editor Marta Koch posed to Mitchell Guttman, Job Dekker, and Stavros Lomvardas. The 4D Nucleome grantees Drs. Job Dekker, Mitchell Guttman, and Stavros Lomvardas discuss the organization of genetic material in the nucleus, how it occurs, and why it matters.
A quick guide to 4DN visualization software
Plot a course through the genome: inspired by Google Maps, a suite of tools is allowing researchers to chart the complex conformations of chromosomes.
Hi-C Data Analysis Bootcamp
A tutorial on measuring, analyzing, and visualizing the 3D genome with Hi-C provided by Harvard, MIT, and UMassMed (Burak Alver, Nils Gehlenborg and Peter Park).
TechBlog: HiPiler simplifies chromatin structure analysis
A blog post about the software HiPiler from Nils Gehlenborg Lab published on Nature.
4D YouTube Channel
Click below to visit the official 4D Nucleome YouTube channel. You can
watch webinars, workshops and other 4DN-related videos are posted. Subscribe to the channel!
Upcoming Workshops & Conferences
CytoData Symposium 2022
When: October 17-22, 2022
Where: Seattle, WA
Website: https://alleninstitute.org/what-we-do/cell-science/events-training/cytodata-symposium-2022/
Past Workshops & Conferences
Keystone Symposia: Higher-Order Chromatin Architecture in Time and Space
When: November 15-17, 2021. 10AM EST.
Where: Virtual Meeting
Scientific Organizers: Jennifer E. Phillips-Cremins, Job Dekker and Stavros Lomvardas
Higher-Order Chromatin Architecture in Time and Space
The 2020 Keystone meeting is meant to highlight new frontiers across disciplines in tackling the dynamics and functional roles of the 3D genome in cellular functions across time and space in development and disease. The conference program will also include workshops on: (1) Leading computational methods to identify biologically relevant patterns in Hi-C data, (2) New genome mapping and imaging technologies, and (3) New data resources available through the 4D Nucleome consortium. Finally, it will conclude with a session devoted to novel tools for imaging and engineering the 3D genome.
When: March 15 – 19, 2020
Where: Whistler Conference Centre, Whistler, BC, Canada
Scientific Organizers: Jennifer E. Phillips-Cremins, Job Dekker and Stavros Lomvardas
2019 4DN-ASCB Satellite Meeting
Bridging the 4D Genome with Cell Biology
When: December 5-6, 2019
Where: Capital Hilton, Washington, D.C.
Meeting Committee Chairs: Jennifer Phillips-Cremins, Bing Ren, Sheng Zhong
2019 Gordon Research Conference
Genome Architecture in Cell Fate and Disease: The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype
When: August 4-9, 2019
Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong
Organizers: Dave Gilbert, Yijun Ruan, Victor Corces and Danny Leung
François Jacob Conference
Evolution, Structure and Function of Chromosomes High Order Structure
When: June 4-7, 2019
Where: Institute Pasteur, Paris, France
Second Annual Meeting on Advances on Nuclear Topology and 3D Chromatin Architecture in Cancer
When: September 24, 2021
Where: Virtual on Zoom
Scientific Organizers: Jane Skok, Iannis Aifantis, Ari Melnick
The Four-Dimensional Genome
This symposium brought together the latest advances in the fields of genomics, microscopy, and modeling to foster their integration towards a comprehensive spatial and temporal understanding of the functional four-dimensional organization of the eukaryotic genome.
Where: EMBL Heidelberg, Germany
Organizers: Wendy Bickmore, Jan Ellenberg, Susan M. Gasser, Christian Haring, Bas van Steensel, Tim Nurnberger.
Long-Read Sequencing Workshop
When: September 17-20, 2019
Where: The Jackson Laboratory for Genomic Medicine, Farmington, CT
Organizers: Chia-Lin Wei, Rachel Goldfeder
2020 FASEB meeting on Nuclear Bodies
When: July 26-31, 2019
Where: Oak island Resort and Conference Center, Nova Scotia, Canada
Organizers: Paul Kaufman, Karla Neugebauer, Thoru Pederson
Southwestern Bioinformatics Conference
When: May 31, 2019
Where: Sanford Consortium, San Diego, CA